Protter

Supported proteomics files are:

Protein XML (.prot.xml)

ProtXML file from TPP or from ProteomeDiscoverer

TPP ProtXLS (.prot.xls)

exported and optionally filtered ProteinProphet file

TPP PepXLS (.pep.xls)

exported and optionally filtered PeptideProphet file

Mascot (.csv)

exported and optionally filtered Mascot file

MaxQuant (evidence.txt)

Andromeda search result file

Skyline (.csv)

exported Skyline file using the "Protter" report

Select the format you want to generate the visualizations:
one multi-page PDF ZIP archive with individual PDFs ZIP archive with individual SVGs ZIP archive with individual PNGs

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Batch processing can take several minutes and therefore results will be sent to you via email.